Transcript: lnc-DEGS2-4:1

Basic information

LNCipedia transcript ID: lnc-DEGS2-4:1 
LNCipedia gene ID: lnc-DEGS2-4
Ensembl Gene ID: ENSG00000258560
Ensembl Transcript ID: ENST00000554245
Location (hg38): chr14:100052803-100074878
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554245.1; CTD-2376I20.1-001; OTTHUMT00000414002.1; NONHSAT039642
Alternative gene names: ENSG00000258560.1; CTD-2376I20.1; OTTHUMG00000171536.1; AL157912.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.2268 non-coding 
CPAT coding probability 4.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEGS2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DEGS2-4:1
4.0 lnc-DEGS2-4:1
4.1 lnc-DEGS2-4:1
5.0 lnc-DEGS2-4:1
5.1 lnc-CCDC85C-12:1
5.2 lnc-DEGS2-4:1