Transcript: lnc-DENND6A-3:3

Basic information

LNCipedia transcript ID: lnc-DENND6A-3:3 
LNCipedia gene ID: lnc-DENND6A-3
Location (hg38): chr3:57751583-57757226
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5644 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000064751.1|ENCT00000303978.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.6155 non-coding 
CPAT coding probability 16.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DENND6A-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM116A-3:1
5.0 lnc-FAM116A-3:1
5.1 lnc-DENND6A-3:1
5.2 lnc-DENND6A-3:3