Transcript: lnc-DENND6A-3:4

Basic information

LNCipedia transcript ID: lnc-DENND6A-3:4 
LNCipedia gene ID: lnc-DENND6A-3
Location (hg38): chr3:57755635-57757226
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1118 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000064751.1|FTMT20900024575.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.0336 non-coding 
CPAT coding probability 20.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DENND6A-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM116A-3:2
5.0 lnc-FAM116A-3:2
5.1 lnc-DENND6A-3:2
5.2 lnc-DENND6A-3:4