Transcript: lnc-DEPDC1-2:1

Basic information

LNCipedia transcript ID: lnc-DEPDC1-2:1 
LNCipedia gene ID: lnc-DEPDC1-2
Ensembl Gene ID: ENSG00000235446
Ensembl Transcript ID: ENST00000439878
Location (hg38): chr1:69243372-69249423
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 434 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000544; ENST00000439878; ENST00000439878.1; RP11-74K19.1-001; OTTHUMT00000025523.1; NONHSAT003834
Alternative gene names: XLOC_000866; linc-DEPDC1-2; ENSG00000235446; RP11-74K19.1; ENSG00000235446.1; OTTHUMG00000009218.1; AL512271.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.0462 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEPDC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DEPDC1-2:1
3.1 lnc-DEPDC1-2:1
4.0 lnc-DEPDC1-2:1
4.1 lnc-DEPDC1-2:1
5.0 lnc-DEPDC1-2:1
5.1 lnc-SERBP1-14:1
5.2 lnc-DEPDC1-2:1