Transcript: lnc-DEPP1-2:1

Basic information

LNCipedia transcript ID: lnc-DEPP1-2:1 
LNCipedia gene ID: lnc-DEPP1-2
Location (hg38): chr10:45100196-45147892
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 873 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000450224.1; RP11-445N18.4-001; OTTHUMT00000047768.1
Alternative gene names: ENSG00000232554.2; RP11-445N18.4; OTTHUMG00000018071.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.6523 non-coding 
CPAT coding probability 3.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEPP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf25-3:1
4.0 lnc-C10orf25-2:19
4.1 lnc-C10orf25-2:19
5.0 lnc-C10orf25-2:19
5.1 lnc-LRRC18-74:1
5.2 lnc-DEPP1-2:1