Transcript: lnc-DEPP1-2:13

Basic information

LNCipedia transcript ID: lnc-DEPP1-2:13 
LNCipedia gene ID: lnc-DEPP1-2
Location (hg38): chr10:45075922-45076683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 328 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018496; NONHSAT013073
Alternative gene names: XLOC_008802; linc-C10orf25


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.1827 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEPP1-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf25-1:1
3.1 lnc-C10orf25-2:1
4.0 lnc-C10orf25-2:1
4.1 lnc-C10orf25-2:1
5.0 lnc-C10orf25-2:1
5.1 lnc-LRRC18-74:13
5.2 lnc-DEPP1-2:13