Transcript: lnc-DEPP1-2:18

Basic information

LNCipedia transcript ID: lnc-DEPP1-2:18 
LNCipedia gene ID: lnc-DEPP1-2
Location (hg38): chr10:45002231-45071588
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2463 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000456938.1; RP11-285G1.8-001; OTTHUMT00000047765.1
Alternative gene names: ENSG00000226937.1; RP11-285G1.8; OTTHUMG00000018068.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 117.5469 coding 
CPAT coding probability 23.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DEPP1-2:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf25-1:1
4.0 lnc-C10orf25-2:23
4.1 lnc-C10orf25-2:23
5.0 lnc-C10orf25-2:23
5.1 lnc-LRRC18-74:18
5.2 lnc-DEPP1-2:18