Transcript: lnc-DERA-2:1

Basic information

LNCipedia transcript ID: lnc-DERA-2:1 
LNCipedia gene ID: lnc-DERA-2
Ensembl Gene ID: ENSG00000256564
Ensembl Transcript ID: ENST00000541892
Location (hg38): chr12:16567411-16573940
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 603 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541892.1; RP11-424M22.3-001; OTTHUMT00000401308.1; NONHSAT027155
Alternative gene names: ENSG00000256564.1; RP11-424M22.3; OTTHUMG00000168838.1; AC007552.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.3313 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DERA-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DERA-2:1
4.0 lnc-DERA-2:1
4.1 lnc-DERA-2:1
5.0 lnc-DERA-2:1
5.1 lnc-BCL2L14-75:1
5.2 lnc-DERA-2:1