Transcript: lnc-DERL3-2:1

Basic information

LNCipedia transcript ID: lnc-DERL3-2:1 
LNCipedia gene ID: lnc-DERL3-2
Ensembl Gene ID: ENSG00000272973
Ensembl Transcript ID: ENST00000609825
Location (hg38): chr22:23856427-23857039
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 613 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609825.1
Alternative gene names: ENSG00000272973.1; KB-1125A3.11; AP000350.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.4039 non-coding 
CPAT coding probability 25.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DERL3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DERL3-2:1
4.0 lnc-DERL3-2:1
4.1 lnc-DERL3-2:1
5.0 lnc-DERL3-2:1
5.1 lnc-SCARF2-69:1
5.2 lnc-DERL3-2:1