Transcript: lnc-DET1-1:16

Basic information

LNCipedia transcript ID: lnc-DET1-1:16 
LNCipedia gene ID: lnc-DET1-1
Ensembl Gene ID: ENSG00000173867
Ensembl Transcript ID: ENST00000561140
Location (hg38): chr15:88459717-88511521
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 598 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561832.1; MRPL46-001; OTTHUMT00000415435.1; ENST00000561140.1; MRPL46-002; OTTHUMT00000432798.1
Alternative gene names: ENSG00000173867.7; MRPL46; OTTHUMG00000171850.2; ENSG00000173867.8; RP11-97O12.7; ENSG00000173867.9; AC013489.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -424.0036 non-coding 
CPAT coding probability 98.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DET1-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPL46.1-1:1
4.0 lnc-MRPL46.1-1:1
4.1 lnc-MRPL46.1-1:1
5.0 lnc-MRPL46.1-1:1
5.1 lnc-DET1-1:9
5.2 lnc-DET1-1:16