Transcript: lnc-DET1-1:18

Basic information

LNCipedia transcript ID: lnc-DET1-1:18 
LNCipedia gene ID: lnc-DET1-1
Location (hg38): chr15:88501944-88505787
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3775 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000501668; TCONS_00023283; NONHSAT048175
Alternative gene names: ENSG00000248072; XLOC_011568; linc-MRPL46


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4216 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DET1-1:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DET1-1:2
3.1 lnc-DET1-1:2
4.0 lnc-MRPL46.1-1:4
4.1 lnc-MRPL46.1-1:4
5.0 lnc-MRPL46.1-1:4
5.1 lnc-DET1-1:11
5.2 lnc-DET1-1:18