Transcript: lnc-DFFA-11:2

Basic information

LNCipedia transcript ID: lnc-DFFA-11:2 
LNCipedia gene ID: lnc-DFFA-11
Location (hg38): chr1:10377471-10398831
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1638 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000046418.1|FTMT20100077034.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -25.8144 non-coding 
CPAT coding probability 6.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DFFA-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-DFFA-2:4
5.0 lnc-DFFA-2:4
5.1 lnc-LZIC-5:2
5.2 lnc-DFFA-11:2