Transcript: lnc-DFFA-1:1

Basic information

LNCipedia transcript ID: lnc-DFFA-1:1 
LNCipedia gene ID: lnc-DFFA-1
Ensembl Gene ID: ENSG00000271989
Ensembl Transcript ID: ENST00000607572
Location (hg38): chr1:10429881-10430677
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 797 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607572.1
Alternative gene names: ENSG00000271989.1; RP4-736L20.3; AL139424.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.6707 non-coding 
CPAT coding probability 9.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DFFA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DFFA-1:1
4.0 lnc-DFFA-1:1
4.1 lnc-DFFA-1:1
5.0 lnc-DFFA-1:1
5.1 lnc-LZIC-6:1
5.2 lnc-DFFA-1:1