Transcript: lnc-DFFA-2:5

Basic information

LNCipedia transcript ID: lnc-DFFA-2:5 
LNCipedia gene ID: lnc-DFFA-2
Location (hg38): chr1:10379188-10380014
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 827 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr1_1470_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.9487 non-coding 
CPAT coding probability 43.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DFFA-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DFFA-3:1
4.0 lnc-DFFA-3:1
4.1 lnc-DFFA-2:5
5.0 lnc-DFFA-2:5
5.1 lnc-LZIC-3:1
5.2 lnc-DFFA-2:5