Transcript: lnc-DFFB-50:6

Basic information

LNCipedia transcript ID: lnc-DFFB-50:6 
LNCipedia gene ID: lnc-DFFB-50
Location (hg38): chr1:3976968-3998200
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001926; NONHSAT000569
Alternative gene names: XLOC_000031; linc-AJAP1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.6092 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DFFB-50:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DFFB-3:2
3.1 lnc-DFFB-3:2
4.0 lnc-DFFB-3:2
4.1 lnc-DFFB-3:2
5.0 lnc-DFFB-3:2
5.1 lnc-VAMP3-50:6
5.2 lnc-DFFB-50:6