Transcript: lnc-DGCR6-2:25

Basic information

LNCipedia transcript ID: lnc-DGCR6-2:25 
LNCipedia gene ID: lnc-DGCR6-2
Location (hg38): chr22:18850118-18861049
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5920 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000412938.1; AC008103.5-001; OTTHUMT00000316712.1; NONHSAT083290
Alternative gene names: ENSG00000161103.6; AC008103.5; OTTHUMG00000150177.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 67.5664 coding 
CPAT coding probability 27.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DGCR6-2:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC008132.13.1-1:1
4.0 lnc-AC008132.13.1-2:8
4.1 lnc-AC008132.13.1-2:8
5.0 lnc-AC008132.13.1-2:8
5.1 lnc-SERPIND1-46:1
5.2 lnc-DGCR6-2:25