Transcript: lnc-DHX35-1:1

Basic information

LNCipedia transcript ID: lnc-DHX35-1:1 
LNCipedia gene ID: lnc-DHX35-1
Ensembl Gene ID: ENSG00000229976
Ensembl Transcript ID: ENST00000444436
Location (hg38): chr20:39785721-39813229
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027927; ENST00000444436; ENST00000444436.1; RP5-1031J8.1-001; OTTHUMT00000079225.1; NONHSAT079728
Alternative gene names: XLOC_013521; linc-TOP1-3; ENSG00000229976; RP5-1031J8.1; ENSG00000229976.1; OTTHUMG00000032468.1; AL118523.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -321.4096 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DHX35-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX35-1:1
3.1 lnc-DHX35-1:1
4.0 lnc-DHX35-1:1
4.1 lnc-DHX35-1:1
5.0 lnc-DHX35-1:1
5.1 lnc-DLGAP4-54:1
5.2 lnc-DHX35-1:1