Transcript: lnc-DHX38-3:5

Basic information

LNCipedia transcript ID: lnc-DHX38-3:5 
LNCipedia gene ID: lnc-DHX38-3
Location (hg38): chr16:72425948-72429173
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3226 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564508.1; AC004158.3-001; OTTHUMT00000423200.1; NONHSAT143566
Alternative gene names: ENSG00000260664.1; AC004158.3; OTTHUMG00000173458.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.3306 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DHX38-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHX38-2:1
4.0 lnc-DHX38-3:5
4.1 lnc-DHX38-3:5
5.0 lnc-DHX38-3:5
5.1 lnc-MARVELD3-30:5
5.2 lnc-DHX38-3:5