Transcript: lnc-DHX38-40:3

Basic information

LNCipedia transcript ID: lnc-DHX38-40:3 
LNCipedia gene ID: lnc-DHX38-40
Ensembl Gene ID: ENSG00000271009
Ensembl Transcript ID: ENST00000604855
Location (hg38): chr16:73060245-73062316
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2072 bp
Exons: 1
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000604855.3
Alternative gene names: ENSG00000271009.3; AC116667.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.8646 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DHX38-40:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MARVELD3-40:3
5.1 lnc-MARVELD3-40:3
5.2 lnc-DHX38-40:3