Transcript: lnc-DHX38-4:5

Basic information

LNCipedia transcript ID: lnc-DHX38-4:5 
LNCipedia gene ID: lnc-DHX38-4
Location (hg38): chr16:72789243-72791623
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2381 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569195.1; RP5-991G20.4-001; OTTHUMT00000421939.1; NONHSAT143607
Alternative gene names: ENSG00000259901.1; RP5-991G20.4; OTTHUMG00000173051.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.8489 non-coding 
CPAT coding probability 9.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DHX38-4:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHX38-5:1
4.0 lnc-DHX38-4:5
4.1 lnc-DHX38-4:5
5.0 lnc-DHX38-4:5
5.1 lnc-MARVELD3-37:13
5.2 lnc-DHX38-4:5