Transcript: lnc-DICER1-1:3

Basic information

LNCipedia transcript ID: lnc-DICER1-1:3 
LNCipedia gene ID: lnc-DICER1-1
Ensembl Gene ID: ENSG00000259143
Ensembl Transcript ID: ENST00000556796
Location (hg38): chr14:95185117-95185854
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 594 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556796.1; CTD-2240H23.2-001; OTTHUMT00000414517.1; NONHSAT039429
Alternative gene names: ENSG00000259143.1; CTD-2240H23.2; OTTHUMG00000171628.1; AL356017.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.9514 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DICER1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLMN-1:1
4.0 lnc-CLMN-1:1
4.1 lnc-CLMN-1:1
5.0 lnc-CLMN-1:1
5.1 lnc-DICER1-1:2
5.2 lnc-DICER1-1:3