Transcript: lnc-DIO2-4:1

Basic information

LNCipedia transcript ID: lnc-DIO2-4:1 
LNCipedia gene ID: lnc-DIO2-4
Ensembl Gene ID: ENSG00000258662
Ensembl Transcript ID: ENST00000554759
Location (hg38): chr14:79246668-79249023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 396 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554759.1; RP11-588P7.2-001; OTTHUMT00000413838.1; NONHSAT038022
Alternative gene names: ENSG00000258662.1; RP11-588P7.2; OTTHUMG00000171517.1; AC022469.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.384 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DIO2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DIO2-4:1
4.0 lnc-DIO2-4:1
4.1 lnc-DIO2-4:1
5.0 lnc-DIO2-4:1
5.1 lnc-PROX2-62:1
5.2 lnc-DIO2-4:1