Transcript: lnc-DISP1-1:11

Basic information

LNCipedia transcript ID: lnc-DISP1-1:11 
LNCipedia gene ID: lnc-DISP1-1
Ensembl Gene ID: ENSG00000228106
Ensembl Transcript ID: ENST00000442171
Location (hg38): chr1:222823884-222837384
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442171.1; RP11-452F19.3-007; OTTHUMT00000092502.1; NONHSAT139931; ENST00000442171.5
Alternative gene names: ENSG00000228106.1; RP11-452F19.3; OTTHUMG00000037767.3; ENSG00000228106.5; AL392172.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.3482 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.363636364
orfFrame7.65621032
seqAAMGGDRTFFNLTNRFLREQTPSYFC

In stringent set: no

Locus conservation

Locus conservation?
lnc-DISP1-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DISP1-1:11
4.0 lnc-DISP1-1:11
4.1 lnc-DISP1-1:11
5.0 lnc-DISP1-1:11
5.1 lnc-CAPN2-23:15
5.2 lnc-DISP1-1:11