Transcript: lnc-DISP1-2:1

Basic information

LNCipedia transcript ID: lnc-DISP1-2:1 
LNCipedia gene ID: lnc-DISP1-2
Ensembl Gene ID: ENSG00000236846
Ensembl Transcript ID: ENST00000435108
Location (hg38): chr1:223144049-223144954
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000408; ENST00000435108; ENST00000435108.1; RP11-239E10.2-001; OTTHUMT00000092590.2; NONHSAT009733
Alternative gene names: XLOC_000579; linc-C1orf65-3; ENSG00000236846; RP11-239E10.2; ENSG00000236846.1; OTTHUMG00000037934.2; AL359979.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.5493 non-coding 
CPAT coding probability 9.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DISP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DISP1-1:1
3.1 lnc-DISP1-2:1
4.0 lnc-DISP1-2:1
4.1 lnc-DISP1-2:1
5.0 lnc-DISP1-2:1
5.1 lnc-CAPN2-15:1
5.2 lnc-DISP1-2:1