Transcript: lnc-DISP1-8:7

Basic information

LNCipedia transcript ID: lnc-DISP1-8:7 
LNCipedia gene ID: lnc-DISP1-8
Ensembl Gene ID: ENSG00000226601
Ensembl Transcript ID: ENST00000446145
Location (hg38): chr1:223181144-223188154
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 487 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000409; ENST00000446145; ENST00000446145.1; RP11-239E10.3-001; OTTHUMT00000092591.1; NONHSAT009734
Alternative gene names: XLOC_000580; linc-C1orf65-1; ENSG00000226601; RP11-239E10.3; ENSG00000226601.1; OTTHUMG00000037935.1; AL359979.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.8343 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DISP1-8:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DISP1-3:1
3.1 lnc-DISP1-4:1
4.0 lnc-DISP1-4:1
4.1 lnc-DISP1-4:1
5.0 lnc-DISP1-4:1
5.1 lnc-CAPN2-13:7
5.2 lnc-DISP1-8:7