Transcript: lnc-DLL1-1:1

Basic information

LNCipedia transcript ID: lnc-DLL1-1:1 
LNCipedia gene ID: lnc-DLL1-1
Ensembl Gene ID: ENSG00000230960
Ensembl Transcript ID: ENST00000452071
RefSeq ID: NR_002787
Location (hg38): chr6:170254334-170262569
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1330 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011146; ENST00000452071.1; RP5-1086L22.1-001; OTTHUMT00000043250.1; NONHSAT116263; NR_002787; NR_002787.2
Alternative gene names: XLOC_005948; linc-TCTE3-1; ENSG00000230960.1; RP5-1086L22.1; OTTHUMG00000016075.1; AL109910.1; LOC154449


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.5466 non-coding 
CPAT coding probability 61.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DLL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DLL1-1:1
3.1 lnc-DLL1-1:1
4.0 lnc-DLL1-1:1
4.1 lnc-DLL1-1:1
5.0 lnc-DLL1-1:1
5.1 lnc-PRKN-99:3
5.2 lnc-DLL1-1:1