Transcript: lnc-DLX2-4:2

Basic information

LNCipedia transcript ID: lnc-DLX2-4:2 
LNCipedia gene ID: lnc-DLX2-4
Ensembl Gene ID: ENSG00000225205
Ensembl Transcript ID: ENST00000442417
Location (hg38): chr2:172480840-172556529
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 950 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442417.1; AC093818.1-001; OTTHUMT00000333833.2; NONHSAT075507; ENST00000442417.5
Alternative gene names: ENSG00000225205.1; AC093818.1; OTTHUMG00000154088.3; ENSG00000225205.5; AC078883.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.6638 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DLX2-4:2 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLX2-4:2
4.0 lnc-DLX2-4:2
4.1 lnc-DLX2-4:2
5.0 lnc-DLX2-4:2
5.1 lnc-OLA1-31:2
5.2 lnc-DLX2-4:2