Transcript: lnc-DLX2-4:5

Basic information

LNCipedia transcript ID: lnc-DLX2-4:5 
LNCipedia gene ID: lnc-DLX2-4
Ensembl Gene ID: ENSG00000225205
Ensembl Transcript ID: ENST00000416080
Location (hg38): chr2:172509029-172512510
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 654 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416080.1; AC093818.1-003; OTTHUMT00000333835.1; NONHSAT075511
Alternative gene names: ENSG00000225205.1; AC093818.1; OTTHUMG00000154088.3; ENSG00000225205.5; AC078883.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.0827 non-coding 
CPAT coding probability 11.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DLX2-4:5 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLX2-4:5
4.0 lnc-DLX2-4:5
4.1 lnc-DLX2-4:5
5.0 lnc-DLX2-4:5
5.1 lnc-OLA1-31:15
5.2 lnc-DLX2-4:5