Transcript: lnc-DLX3-3:6

Basic information

LNCipedia transcript ID: lnc-DLX3-3:6 
LNCipedia gene ID: lnc-DLX3-3
Ensembl Gene ID: ENSG00000246640
Ensembl Transcript ID: ENST00000499842
RefSeq ID: NR_038230
Location (hg38): chr17:50050349-50055739
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2533 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025236; ENST00000499842; ENST00000499842.1; RP11-1094H24.4-001; OTTHUMT00000366306.1; NONHSAT054578; NR_038230; NR_038230.1
Alternative gene names: XLOC_012509; linc-DLX3-2; ENSG00000246640; RP11-1094H24.4; ENSG00000246640.1; OTTHUMG00000161891.1; PICART1; LOC284080; AC009720.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.8545 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DLX3-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SAMD14-1:1
3.1 lnc-SAMD14-3:1
4.0 lnc-SAMD14-3:1
4.1 lnc-DLX3-3:6
5.0 lnc-DLX3-3:6
5.1 lnc-LRRC59-15:6
5.2 lnc-DLX3-3:6