Transcript: lnc-DMBX1-4:1

Basic information

LNCipedia transcript ID: lnc-DMBX1-4:1 
LNCipedia gene ID: lnc-DMBX1-4
Location (hg38): chr1:46455823-46482475
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 354 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000191; ENST00000455247; ENST00000455247.1; LINC00505-001; OTTHUMT00000021917.1; NONHSAT003016
Alternative gene names: XLOC_000170; linc-DMBX1; ENSG00000225667; RP5-1109J22.3; ENSG00000225667.1; LINC00505; OTTHUMG00000007985.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.2218 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMBX1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMBX1-1:1
3.1 lnc-DMBX1-1:1
4.0 LINC00505:1
4.1 LINC00505:1
5.0 LINC00505:1
5.1 lnc-UQCRH-7:1
5.2 lnc-DMBX1-4:1