Transcript: lnc-DMRTA1-7:7

Basic information

LNCipedia transcript ID: lnc-DMRTA1-7:7 
LNCipedia gene ID: lnc-DMRTA1-7
Ensembl Gene ID: ENSG00000269957
Ensembl Transcript ID: ENST00000602614
Location (hg38): chr9:24545998-24553239
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 618 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147670; ENST00000602614.1
Alternative gene names: ENSG00000269957.1; RP11-20A20.2; ENSG00000269957.5; AL353811.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.6973 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMRTA1-7:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMRTA1-7:7
4.0 lnc-DMRTA1-7:7
4.1 lnc-DMRTA1-7:7
5.0 lnc-DMRTA1-7:7
5.1 lnc-RECK-113:6
5.2 lnc-DMRTA1-7:7