Transcript: lnc-DMRTA2-1:18

Basic information

LNCipedia transcript ID: lnc-DMRTA2-1:18 
LNCipedia gene ID: lnc-DMRTA2-1
Location (hg38): chr1:50251510-50258204
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001490; NONHSAT003156
Alternative gene names: XLOC_000830; linc-AGBL4-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.3485 non-coding 
CPAT coding probability 8.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMRTA2-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRTA2-3:1
3.1 lnc-DMRTA2-3:1
4.0 lnc-DMRTA2-3:1
4.1 lnc-DMRTA2-3:1
5.0 lnc-DMRTA2-3:1
5.1 lnc-DMRTA2-1:14
5.2 lnc-DMRTA2-1:18