Transcript: lnc-DNAAF1-1:1

Basic information

LNCipedia transcript ID: lnc-DNAAF1-1:1 
LNCipedia gene ID: lnc-DNAAF1-1
Ensembl Gene ID: ENSG00000260018
Ensembl Transcript ID: ENST00000565382
Location (hg38): chr16:84117051-84117571
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 521 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565382.1; RP11-505K9.1-001; OTTHUMT00000431714.1; NONHSAT144040
Alternative gene names: ENSG00000260018.1; RP11-505K9.1; OTTHUMG00000176278.1; AC040169.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -326.9836 non-coding 
CPAT coding probability 7.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAAF1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAAF1-1:1
4.0 lnc-DNAAF1-1:1
4.1 lnc-DNAAF1-1:1
5.0 lnc-DNAAF1-1:1
5.1 lnc-CRISPLD2-31:3
5.2 lnc-DNAAF1-1:1