Transcript: lnc-DNAAF4-2:6

Basic information

LNCipedia transcript ID: lnc-DNAAF4-2:6 
LNCipedia gene ID: lnc-DNAAF4-2
Ensembl Gene ID: ENSG00000261771
Ensembl Transcript ID: ENST00000565113
Location (hg38): chr15:55355248-55498360
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4589 bp
Exons: 16
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565113.1; DYX1C1-CCPG1-001; OTTHUMT00000419949.1; ENST00000565113.5
Alternative gene names: ENSG00000261771.1; DYX1C1-CCPG1; OTTHUMG00000172694.1; ENSG00000261771.5; DNAAF4-CCPG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4168.3622 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DNAAF4-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DYX1C1-CCPG1-2:1
4.0 lnc-DYX1C1-CCPG1-2:1
4.1 lnc-DYX1C1-CCPG1-2:1
5.0 lnc-DYX1C1-CCPG1-2:1
5.1 lnc-DNAAF4-3:5
5.2 lnc-DNAAF4-2:6