Transcript: lnc-DNAAF5-3:22

Basic information

LNCipedia transcript ID: lnc-DNAAF5-3:22 
LNCipedia gene ID: lnc-DNAAF5-3
Location (hg38): chr7:523278-524374
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 334 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013294; NONHSAT118644
Alternative gene names: XLOC_005958; linc-HEATR2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.9189 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAAF5-3:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HEATR2-1:7
3.1 lnc-HEATR2-3:7
4.0 lnc-HEATR2-3:7
4.1 lnc-HEATR2-3:7
5.0 lnc-HEATR2-3:7
5.1 lnc-GPER1-29:22
5.2 lnc-DNAAF5-3:22