Transcript: lnc-DNAJB6-10:2

Basic information

LNCipedia transcript ID: lnc-DNAJB6-10:2 
LNCipedia gene ID: lnc-DNAJB6-10
Ensembl Gene ID: ENSG00000233038
Ensembl Transcript ID: ENST00000438047
RefSeq ID: NR_038966
Location (hg38): chr7:157854585-157866092
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4302 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000438047.1; AC011899.9-001; OTTHUMT00000327104.1; NONHSAT124517; NR_038966.1
Alternative gene names: ENSG00000233038.1; AC011899.9; OTTHUMG00000152644.1; ENSG00000233038.5; AC011899.2; LOC100506585


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7615 non-coding 
CPAT coding probability 72.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DNAJB6-10:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC005481.5.1-1:2
4.0 lnc-AC005481.5.1-1:2
4.1 lnc-AC005481.5.1-1:2
5.0 lnc-AC005481.5.1-1:2
5.1 lnc-RNF32-35:2
5.2 lnc-DNAJB6-10:2