Transcript: lnc-DNAJB6-2:3

Basic information

LNCipedia transcript ID: lnc-DNAJB6-2:3 
LNCipedia gene ID: lnc-DNAJB6-2
Ensembl Gene ID: ENSG00000234210
Ensembl Transcript ID: ENST00000444158
RefSeq ID: NR_110157
Location (hg38): chr7:157466231-157499716
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4049 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00013104; ENST00000444158; ENST00000444158.1; AC006372.4-001; OTTHUMT00000327102.1; NONHSAT124497; NR_110157; NR_110157.1
Alternative gene names: XLOC_006315; linc-WDR60-4; ENSG00000234210; AC006372.4; ENSG00000234210.1; OTTHUMG00000152642.1; AC006372.3; LOC101927914


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5703 non-coding 
CPAT coding probability 13.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJB6-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC006372.1-2:1
3.1 lnc-AC006372.1-2:1
4.0 lnc-AC006372.1-2:1
4.1 lnc-AC006372.1-2:1
5.0 lnc-AC006372.1-2:1
5.1 lnc-RNF32-31:2
5.2 lnc-DNAJB6-2:3