Transcript: lnc-DNAJB6-7:1

Basic information

LNCipedia transcript ID: lnc-DNAJB6-7:1 
LNCipedia gene ID: lnc-DNAJB6-7
Ensembl Gene ID: ENSG00000223872
Ensembl Transcript ID: ENST00000449903
Location (hg38): chr7:157501322-157503577
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013105; ENST00000449903; ENST00000449903.1; AC006372.5-001; OTTHUMT00000327108.1; NONHSAT124498
Alternative gene names: XLOC_006316; linc-WDR60-3; ENSG00000223872; AC006372.5; ENSG00000223872.1; OTTHUMG00000152645.1; AC006372.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.5978 non-coding 
CPAT coding probability 4.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJB6-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC006372.1-1:1
3.1 lnc-AC006372.1-1:1
4.0 lnc-AC006372.1-1:1
4.1 lnc-AC006372.1-1:1
5.0 lnc-AC006372.1-1:1
5.1 lnc-RNF32-32:1
5.2 lnc-DNAJB6-7:1