Transcript: lnc-DNAJC19-2:2

Basic information

LNCipedia transcript ID: lnc-DNAJC19-2:2 
LNCipedia gene ID: lnc-DNAJC19-2
Location (hg38): chr3:181420250-181442508
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1637 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006716; NONHSAT093477
Alternative gene names: XLOC_003343; linc-DNAJC19-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.8237 non-coding 
CPAT coding probability 16.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJC19-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAJC19-2:2
3.1 lnc-DNAJC19-2:2
4.0 lnc-DNAJC19-2:2
4.1 lnc-DNAJC19-2:2
5.0 lnc-DNAJC19-2:2
5.1 lnc-CCDC39-6:2
5.2 lnc-DNAJC19-2:2