Transcript: lnc-DNAJC28-1:5

Basic information

LNCipedia transcript ID: lnc-DNAJC28-1:5 
LNCipedia gene ID: lnc-DNAJC28-1
Location (hg38): chr21:33482534-33484366
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029113; NONHSAT081792
Alternative gene names: XLOC_014060; linc-TMEM50B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.6418 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJC28-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM50B-1:1
3.1 lnc-TMEM50B-1:1
4.0 lnc-TMEM50B-1:1
4.1 lnc-TMEM50B-1:1
5.0 lnc-TMEM50B-1:1
5.1 lnc-DNAJC28-1:3
5.2 lnc-DNAJC28-1:5