Transcript: lnc-DNAJC28-1:6

Basic information

LNCipedia transcript ID: lnc-DNAJC28-1:6 
LNCipedia gene ID: lnc-DNAJC28-1
Ensembl Gene ID: ENSG00000231355
Ensembl Transcript ID: ENST00000450928
Location (hg38): chr21:33482499-33484258
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028919; ENST00000450928.1; AP000302.58-001; OTTHUMT00000140453.1; NONHSAT081791
Alternative gene names: XLOC_014060; linc-TMEM50B; ENSG00000231355.1; AP000302.58; OTTHUMG00000065530.1; AP000302.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.6757 non-coding 
CPAT coding probability 2.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJC28-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM50B-1:2
3.1 lnc-TMEM50B-1:2
4.0 lnc-TMEM50B-1:2
4.1 lnc-TMEM50B-1:2
5.0 lnc-TMEM50B-1:2
5.1 lnc-DNAJC28-1:4
5.2 lnc-DNAJC28-1:6