Transcript: lnc-DNAJC8-1:1

Basic information

LNCipedia transcript ID: lnc-DNAJC8-1:1 
LNCipedia gene ID: lnc-DNAJC8-1
Location (hg38): chr1:28241269-28247159
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001440; NONHSAT001944
Alternative gene names: XLOC_000757; linc-DNAJC8-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.0003 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJC8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAJC8-1:1
3.1 lnc-DNAJC8-1:1
4.0 lnc-DNAJC8-1:1
4.1 lnc-DNAJC8-1:1
5.0 lnc-DNAJC8-1:1
5.1 lnc-DNAJC8-1:1
5.2 lnc-DNAJC8-1:1