Transcript: lnc-DOK7-2:4

Basic information

LNCipedia transcript ID: lnc-DOK7-2:4 
LNCipedia gene ID: lnc-DOK7-2
Ensembl Gene ID: ENSG00000270090
Ensembl Transcript ID: ENST00000602543
Location (hg38): chr4:3544888-3548796
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007460; NONHSAT094886; ENST00000602543.1
Alternative gene names: XLOC_003427; linc-ADRA2C-5; ENSG00000270090.1; RP11-529E10.7; ENSG00000270090.5; AL590235.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.2691 non-coding 
CPAT coding probability 23.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DOK7-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP3-368B9.1.1-2:2
3.1 lnc-RP3-368B9.1.1-2:2
4.0 lnc-RP3-368B9.1.1-2:2
4.1 lnc-RP3-368B9.1.1-2:2
5.0 lnc-RP3-368B9.1.1-2:2
5.1 lnc-GPR78-60:4
5.2 lnc-DOK7-2:4