Transcript: lnc-DOPEY1-1:1

Basic information

LNCipedia transcript ID: lnc-DOPEY1-1:1 
LNCipedia gene ID: lnc-DOPEY1-1
Ensembl Gene ID: ENSG00000227215
Ensembl Transcript ID: ENST00000451856
Location (hg38): chr6:82932601-82938677
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 480 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451856.1; RP11-445L13__B.3-001; OTTHUMT00000041343.1; NONHSAT113779
Alternative gene names: ENSG00000227215.1; RP11-445L13__B.3; OTTHUMG00000015106.1; AL355613.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.3678 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DOPEY1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DOPEY1-1:1
4.0 lnc-DOPEY1-1:1
4.1 lnc-DOPEY1-1:1
5.0 lnc-DOPEY1-1:1
5.1 lnc-CYB5R4-11:1
5.2 lnc-DOPEY1-1:1