Transcript: lnc-DPH1-5:1

Basic information

LNCipedia transcript ID: lnc-DPH1-5:1 
LNCipedia gene ID: lnc-DPH1-5
Location (hg38): chr17:1995614-2003538
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 737 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000574520.1; CTD-2545H1.2-001; OTTHUMT00000440518.1; NONHSAT144881
Alternative gene names: ENSG00000262445.1; CTD-2545H1.2; OTTHUMG00000177763.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.4881 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DPH1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DPH1-2:1
4.0 lnc-DPH1-2:1
4.1 lnc-DPH1-2:1
5.0 lnc-DPH1-2:1
5.1 lnc-RPA1-2:1
5.2 lnc-DPH1-5:1