Transcript: lnc-DPH6-2:2

Basic information

LNCipedia transcript ID: lnc-DPH6-2:2 
LNCipedia gene ID: lnc-DPH6-2
Ensembl Gene ID: ENSG00000259639
Ensembl Transcript ID: ENST00000560886
Location (hg38): chr15:35939167-35974769
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 652 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560886.1; RP11-184D12.1-001; OTTHUMT00000418040.1; NONHSAT041641; ENST00000560886.5
Alternative gene names: ENSG00000259639.1; RP11-184D12.1; OTTHUMG00000172355.1; ENSG00000259639.5; AC021351.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.8127 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DPH6-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATPBD4-2:2
4.0 lnc-ATPBD4-2:2
4.1 lnc-ATPBD4-2:2
5.0 lnc-ATPBD4-2:2
5.1 lnc-NANOGP8-8:2
5.2 lnc-DPH6-2:2