Transcript: lnc-DPT-1:1

Basic information

LNCipedia transcript ID: lnc-DPT-1:1 
LNCipedia gene ID: lnc-DPT-1
Ensembl Gene ID: ENSG00000235736
Ensembl Transcript ID: ENST00000457405
Location (hg38): chr1:168763365-168774490
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000674; ENST00000457405; ENST00000457405.1; RP1-10C16.1-001; OTTHUMT00000083614.1; NONHSAT007443
Alternative gene names: XLOC_001085; linc-DPT-1; ENSG00000235736; RP1-10C16.1; ENSG00000235736.1; OTTHUMG00000034550.1; AL031275.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.2765 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DPT-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DPT-1:1
3.1 lnc-DPT-1:1
4.0 lnc-DPT-1:1
4.1 lnc-DPT-1:1
5.0 lnc-DPT-1:1
5.1 lnc-SH2D1B-78:1
5.2 lnc-DPT-1:1