Transcript: lnc-DPYS-1:1

Basic information

LNCipedia transcript ID: lnc-DPYS-1:1 
LNCipedia gene ID: lnc-DPYS-1
Location (hg38): chr8:104330324-104418912
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 589 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000521601.1; KB-1552D7.2-001; OTTHUMT00000380806.1; NONHSAT128206
Alternative gene names: ENSG00000254191.1; KB-1552D7.2; OTTHUMG00000164889.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -319.7851 non-coding 
CPAT coding probability 8.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DPYS-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DPYS-1:1
4.0 lnc-DPYS-1:1
4.1 lnc-DPYS-1:1
5.0 lnc-DPYS-1:1
5.1 lnc-ZNF706-97:1
5.2 lnc-DPYS-1:1