Transcript: lnc-DRD5-5:1

Basic information

LNCipedia transcript ID: lnc-DRD5-5:1 
LNCipedia gene ID: lnc-DRD5-5
Ensembl Gene ID: ENSG00000249334
Ensembl Transcript ID: ENST00000505494
Location (hg38): chr4:10685003-10697661
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 640 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007471; ENST00000505494; ENST00000505494.1; RP11-61G19.1-001; OTTHUMT00000359050.2; NONHSAT095507
Alternative gene names: XLOC_003452; linc-CPEB2-14; ENSG00000249334; RP11-61G19.1; ENSG00000249334.1; OTTHUMG00000160063.2; AC084048.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.9071 non-coding 
CPAT coding probability 3.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DRD5-5:1 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DRD5-3:1
3.1 lnc-DRD5-5:1
4.0 lnc-DRD5-5:1
4.1 lnc-DRD5-5:1
5.0 lnc-DRD5-5:1
5.1 lnc-USP17L28-9:1
5.2 lnc-DRD5-5:1