Transcript: lnc-DTHD1-3:2

Basic information

LNCipedia transcript ID: lnc-DTHD1-3:2 
LNCipedia gene ID: lnc-DTHD1-3
Ensembl Gene ID: ENSG00000250597
Ensembl Transcript ID: ENST00000514737
Location (hg38): chr4:34657606-34668740
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 246 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007508; ENST00000514737; ENST00000514737.1; RP11-725M22.1-001; OTTHUMT00000360733.1; NONHSAT095982; ENST00000514737.5
Alternative gene names: XLOC_003504; linc-DTHD1-2; ENSG00000250597; RP11-725M22.1; ENSG00000250597.1; OTTHUMG00000160471.1; ENSG00000250597.5; AC093689.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.5268 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTHD1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DTHD1-3:2
3.1 lnc-DTHD1-3:2
4.0 lnc-DTHD1-3:2
4.1 lnc-DTHD1-3:2
5.0 lnc-DTHD1-3:2
5.1 lnc-GABRB1-94:3
5.2 lnc-DTHD1-3:2